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Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST039479
species: Physcomitrella patens
miRNA family: MIR171_1
source: miRBase, original name: ppt-MIR171b (MI0005689)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGCGCCAATATCACA

miRNA*
TGTTATTGGGCCCGCTCAATC

mismatches: 2
bulges: 2

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pre-miRNA
AGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTT

dot-bracket secondary structure
(((.(((((.((((((((..((((((((.((.(.(....(((((....)))))....).).)).)))))))).)).)))))).)))))))).


SIMILARITIES
miRBase ppt-MIR171a: 0.00000000007

PMRD ppt-miR171b: 3e-47

microPC miR171: 0.00000007
UniProt no hits

RFAM MIR171_1: 5e-46

Identical with: ppt-miR171b from PMRD (MNEST051383)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
deep sequencing data evidence

references

[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"




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